2605.02554 EnhancerPromoterEngine: Activity-by-Contact Model for Genome-Wide Enhancer-Gene Regulatory Interaction Prediction
Enhancers are distal regulatory elements that activate gene transcription through chromatin looping, but assigning enhancers to their target genes remains challenging. We present EnhancerPromoterEngine, a pure-Python implementation of the Activity-by-Contact (ABC) model.